PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 350aa    MW: 38210.3 Da    PI: 6.971
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935018.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-0895120127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC+ f++ GtC+y  +C+FaHg+
  XP_010935018.1  95 FKTKLCCKFRA-GTCPYITNCNFAHGM 120
                     69*********.*************95 PP

2zf-CCCH43.45.5e-14226251126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_010935018.1 226 WKTRICNKWEMTGYCPFGSKCHFAHG 251
                     8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-1492127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-892125IPR000571Zinc finger, CCCH-type
SMARTSM003560.001694120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.73794121IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-595120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-6163192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-8164192IPR000571Zinc finger, CCCH-type
SMARTSM003560.34164191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.441164192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-17221255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-10222256IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9225252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422225253IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11226251IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDYSSNAIEI IPEATGPEPW AQASNDQAIW ATEDDYRSWS GEPSADSASN PAYGDRQSQS  60
QSRAGSEQPP SKKPRNPSEG NGSMSKSRAI GKMFFKTKLC CKFRAGTCPY ITNCNFAHGM  120
EELRKPPPNW QEIVAAQEEG AEPREEHQIP ILTSSSLGGD GQRSYKGRHC KKFYTEEGCP  180
YGEMCTFLHD EQSKARESVA ISLSPTVGGG AYGGGSNGSN QKPSNWKTRI CNKWEMTGYC  240
PFGSKCHFAH GAAELHKYGG GLVETEGRDA SSAAPDMKQA GVSTKAPADT VVAPMTSVPH  300
VDVYHMGVPS QRSTIINQRQ GLSQGQRTLQ KWKGPDKISR IYGDWIEENE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935018.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-153C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLI1I1E01e-170I1I1E0_BRADI; Uncharacterized protein
STRINGBRADI3G16377.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-119C3H family protein